PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00420.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family bHLH
Protein Properties Length: 360aa    MW: 39911.6 Da    PI: 5.8416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00420.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.76.6e-16153199455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Migut.H00420.1.p 153 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 199
                       6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-20146209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-19146209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-15152203No hitNo description
PfamPF000102.2E-13153199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MANLYNTTTT TATATNYSPS PPPPPEPDEI SLFLQQILLR SSSSSSSPSS SSLMRRQFFA  60
ADNDHLLTEN QAPAPAPVPY PDPGQIHAPD PASGCSFAAA ANVSSSSVGN FDNEPDEYEY  120
ESEENVEALV EETIPKQTSS SRTSSKRSRA AEVHNLSEKR RRSRINEKMK ALQNLIPNSN  180
KTDKASMLDE AIEYLKQLQL QVQMLTMRNG LSLYPICLPE MLQQQQHSQT SHMRMDIFDT  240
SDKFLNTNVS KENCVKQDFS ATIGPKSSFK LEYSSQQNHF GPLDLISTTS SIEKVMPRHS  300
PNQDYIERSL IGHKAISSIP IETRKSRLKE STIEACLAGG DNLISNFVNN PMFLSHFNM*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856270.10.0PREDICTED: transcription factor SPATULA
TrEMBLA0A022RWJ21e-162A0A022RWJ2_ERYGU; Uncharacterized protein
STRINGSolyc02g093280.2.11e-67(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98502227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-40bHLH family protein